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alpha-glucan rcognition by a family 41 carbohydrate-binding module from Thermotoga maritima pullulanase PulA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J71 PDB ENTRY 2J71
Crystallization Crystal Properties Matthews coefficient Solvent content 1.67 25.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.528 α = 90 b = 37.037 β = 112.01 c = 54.91 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU IMAGE PLATE M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 19.8 91.2 0.04 17.8 3.65 35936 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 68.4 0.26 2.8 2.74
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2J71 1.4 50.64 34128 1800 91.1 0.152 0.149 0.207 0.2152 RANDOM 15.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 -0.25 0.18 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 17.109 r_scangle_it 5.452 r_scbond_it 4.066 r_mcangle_it 2.652 r_mcbond_it 1.886 r_angle_refined_deg 1.856 r_angle_other_deg 0.863 r_symmetry_vdw_refined 0.5 r_symmetry_vdw_other 0.345 r_nbd_other 0.256
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 17.109 r_scangle_it 5.452 r_scbond_it 4.066 r_mcangle_it 2.652 r_mcbond_it 1.886 r_angle_refined_deg 1.856 r_angle_other_deg 0.863 r_symmetry_vdw_refined 0.5 r_symmetry_vdw_other 0.345 r_nbd_other 0.256 r_symmetry_hbond_refined 0.256 r_xyhbond_nbd_refined 0.207 r_nbd_refined 0.202 r_chiral_restr 0.115 r_nbtor_other 0.085 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1703 Nucleic Acid Atoms Solvent Atoms 336 Heterogen Atoms 79
Software Software Software Name Purpose REFMAC refinement