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Structural and functional characterisation of partner-switching regulating the environmental stress response in B. subtilis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W53 PDB ENTRY 1W53
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 10 % PEG 20000, 100 MM MES PH 6.5
Crystal Properties Matthews coefficient Solvent content 1.51 18.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.924 α = 90 b = 44.916 β = 90 c = 77.505 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 28.8 100 0.08 7.3 6.7 5862
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 100 0.35 2.1 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1W53 1.95 24.23 5419 279 99.9 0.233 0.229 0.2297 0.306 0.294 RANDOM 20.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.02 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.694 r_dihedral_angle_4_deg 20.963 r_dihedral_angle_3_deg 19.171 r_dihedral_angle_1_deg 6.637 r_scangle_it 3.821 r_scbond_it 2.836 r_angle_refined_deg 2.069 r_mcangle_it 1.653 r_mcbond_it 1.123 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.694 r_dihedral_angle_4_deg 20.963 r_dihedral_angle_3_deg 19.171 r_dihedral_angle_1_deg 6.637 r_scangle_it 3.821 r_scbond_it 2.836 r_angle_refined_deg 2.069 r_mcangle_it 1.653 r_mcbond_it 1.123 r_nbtor_refined 0.312 r_symmetry_hbond_refined 0.252 r_nbd_refined 0.228 r_symmetry_vdw_refined 0.226 r_xyhbond_nbd_refined 0.205 r_chiral_restr 0.145 r_bond_refined_d 0.023 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 724 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling