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Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BQR PDB ENTRY 2BQR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 10% PEG 3350, 100 MM CA(CH3CO2)2, 50MM NACL, 5MM CACL2, AND 1MM DATP., pH 7.40
Crystal Properties Matthews coefficient Solvent content 2.57 53.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.012 α = 90 b = 102.949 β = 90 c = 53.013 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER BRUKER MONTEL CONFOCAL MULTILAYER MIRRORS 2005-08-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 22.5 99.6 0.11 9.94 4.35 16550 45.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.7 98.6 0.97 1.4 3.26
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BQR 2.6 22.5 16550 812 99.7 0.237 0.237 0.2257 0.269 0.2598 RANDOM 43.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.36 -4.41 2.06
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.2 c_scangle_it 2.93 c_mcangle_it 2.13 c_scbond_it 1.81 c_angle_deg 1.3 c_mcbond_it 1.23 c_improper_angle_d 1.03 c_bond_d 0.008 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.2 c_scangle_it 2.93 c_mcangle_it 2.13 c_scbond_it 1.81 c_angle_deg 1.3 c_mcbond_it 1.23 c_improper_angle_d 1.03 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2744 Nucleic Acid Atoms 610 Solvent Atoms 89 Heterogen Atoms 33
Software Software Software Name Purpose CNS refinement SAINT data reduction SAINT data scaling CNS phasing