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Structure of aminoadipate-semialdehyde dehydrogenase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NZX PDB ENTRY 1NZX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.6 0.1 M BTPROP PH 6.6, 0.20 M NABR, 23% PEG3350, 10% ETHYLENE GLYCOLE
Crystal Properties Matthews coefficient Solvent content 2.22 44.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 155.289 α = 90 b = 162.326 β = 94.17 c = 159.016 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 49.2 85.1 0.09 8.91 3.33 816066
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.4 44 0.41 1.61 0.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1NZX 1.3 50 775066 40940 85.1 0.14 0.137 0.1446 0.189 0.1924 RANDOM 11.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 0.31 0.2 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.173 r_dihedral_angle_4_deg 18.416 r_dihedral_angle_3_deg 11.567 r_scangle_it 7.176 r_dihedral_angle_1_deg 6.133 r_scbond_it 5.646 r_mcangle_it 3.893 r_mcbond_it 3.014 r_mcbond_other 1.516 r_angle_refined_deg 1.473
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.173 r_dihedral_angle_4_deg 18.416 r_dihedral_angle_3_deg 11.567 r_scangle_it 7.176 r_dihedral_angle_1_deg 6.133 r_scbond_it 5.646 r_mcangle_it 3.893 r_mcbond_it 3.014 r_mcbond_other 1.516 r_angle_refined_deg 1.473 r_angle_other_deg 0.985 r_symmetry_vdw_other 0.288 r_symmetry_vdw_refined 0.285 r_nbd_refined 0.21 r_nbd_other 0.197 r_nbtor_refined 0.178 r_metal_ion_refined 0.177 r_symmetry_hbond_refined 0.163 r_xyhbond_nbd_refined 0.157 r_chiral_restr 0.089 r_nbtor_other 0.084 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 30238 Nucleic Acid Atoms Solvent Atoms 5031 Heterogen Atoms 375
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing