X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1NZXPDB ENTRY 1NZX

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.60.1 M BTPROP PH 6.6, 0.20 M NABR, 23% PEG3350, 10% ETHYLENE GLYCOLE
Crystal Properties
Matthews coefficientSolvent content
2.2244.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 155.289α = 90
b = 162.326β = 94.17
c = 159.016γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2006-07-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.349.285.10.098.913.33816066
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.4440.411.610.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1NZX1.3507750664094085.10.140.1370.189RANDOM11.97
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.270.310.20.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.173
r_dihedral_angle_4_deg18.416
r_dihedral_angle_3_deg11.567
r_scangle_it7.176
r_dihedral_angle_1_deg6.133
r_scbond_it5.646
r_mcangle_it3.893
r_mcbond_it3.014
r_mcbond_other1.516
r_angle_refined_deg1.473
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.173
r_dihedral_angle_4_deg18.416
r_dihedral_angle_3_deg11.567
r_scangle_it7.176
r_dihedral_angle_1_deg6.133
r_scbond_it5.646
r_mcangle_it3.893
r_mcbond_it3.014
r_mcbond_other1.516
r_angle_refined_deg1.473
r_angle_other_deg0.985
r_symmetry_vdw_other0.288
r_symmetry_vdw_refined0.285
r_nbd_refined0.21
r_nbd_other0.197
r_nbtor_refined0.178
r_metal_ion_refined0.177
r_symmetry_hbond_refined0.163
r_xyhbond_nbd_refined0.157
r_chiral_restr0.089
r_nbtor_other0.084
r_bond_refined_d0.015
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms30238
Nucleic Acid Atoms
Solvent Atoms5031
Heterogen Atoms375

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing