2J6K

N-TERMINAL SH3 DOMAIN OF CMS (CD2AP HUMAN HOMOLOG)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.10.1 M SODIUM CITRATE PH 6.1, 25% PEG 4000, 20% ISOPROPANOL
Crystal Properties
Matthews coefficientSolvent content
3.363

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 120.018α = 90
b = 120.018β = 90
c = 153.93γ = 90
Symmetry
Space GroupI 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray130CCDMARRESEARCHMIRRORS2006-05-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEENRAF-NONIUS FR591

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.7647.397.20.110.983.472749162.58
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.762.79810.330.953.26

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT2.7794.4927491138599.80.2110.2080.274RANDOM30.32
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.468-0.4680.935
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.808
r_dihedral_angle_3_deg18.522
r_dihedral_angle_4_deg13.133
r_dihedral_angle_1_deg5.473
r_scangle_it2.719
r_scbond_it1.629
r_angle_refined_deg1.465
r_mcangle_it0.733
r_nbtor_refined0.324
r_mcbond_it0.312
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.808
r_dihedral_angle_3_deg18.522
r_dihedral_angle_4_deg13.133
r_dihedral_angle_1_deg5.473
r_scangle_it2.719
r_scbond_it1.629
r_angle_refined_deg1.465
r_mcangle_it0.733
r_nbtor_refined0.324
r_mcbond_it0.312
r_symmetry_vdw_refined0.223
r_nbd_refined0.216
r_symmetry_hbond_refined0.205
r_xyhbond_nbd_refined0.143
r_chiral_restr0.109
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5712
Nucleic Acid Atoms
Solvent Atoms95
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
TRUNCATEdata scaling