☰ Navigation Tabs
Candida boidinii formate dehydrogenase (FDH) C-terminal mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2NAC PDB ENTRY 2NAC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 0.1 M SODIUM-CACODYLATE PH 6.0 0.2 M AMMONIUM-SULPHATE 32.5 % W/V PEG 8K
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.36 α = 78.07 b = 68.14 β = 89.41 c = 109.15 γ = 81.27
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH BENT MIRROR 2005-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 19.5 95.9 0.15 12 2.4 196828
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.9 94.2 0.5 3 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2NAC 1.55 19.26 196828 10365 96.1 0.21 0.208 0.254 RANDOM 19.87
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.03 -0.01 -0.02 0.01 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.311 r_dihedral_angle_4_deg 13.985 r_dihedral_angle_3_deg 13.414 r_dihedral_angle_1_deg 5.964 r_scangle_it 2.505 r_scbond_it 1.677 r_angle_refined_deg 1.268 r_mcangle_it 1.046 r_mcbond_it 0.654 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.311 r_dihedral_angle_4_deg 13.985 r_dihedral_angle_3_deg 13.414 r_dihedral_angle_1_deg 5.964 r_scangle_it 2.505 r_scbond_it 1.677 r_angle_refined_deg 1.268 r_mcangle_it 1.046 r_mcbond_it 0.654 r_nbtor_refined 0.307 r_nbd_refined 0.2 r_symmetry_vdw_refined 0.164 r_symmetry_hbond_refined 0.14 r_xyhbond_nbd_refined 0.134 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10980 Nucleic Acid Atoms Solvent Atoms 2175 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALEPACK data scaling AMoRE phasing