☰ Navigation Tabs
GLUTAMATE 5-KINASE FROM ESCHERICHIA COLI COMPLEXED WITH GLUTAMYL-5-PHOSPHATE AND PYROGLUTAMIC ACID
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AKO PDB ENTRY 2AKO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 1.6 M MGSO4, 0.1 M KCL, 0.1 M MES PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.92 57.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.455 α = 90 b = 101.455 β = 90 c = 178.728 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH A RD COATED FLAT MIRROR AND A RD COATED TOROIDAL MIRROR 2003-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM16 ESRF BM16
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 48.8 99.5 0.07 6.8 11.1 61566 1.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 99.5 0.42 1.7 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2AKO 2.5 88.39 31155 1667 99.5 0.195 0.192 0.244 0.2436 RANDOM 37.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.32 -0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.844 r_dihedral_angle_4_deg 20.091 r_dihedral_angle_3_deg 17.168 r_dihedral_angle_1_deg 5.868 r_scangle_it 2.639 r_scbond_it 1.592 r_angle_refined_deg 1.353 r_mcangle_it 0.898 r_mcbond_it 0.515 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.844 r_dihedral_angle_4_deg 20.091 r_dihedral_angle_3_deg 17.168 r_dihedral_angle_1_deg 5.868 r_scangle_it 2.639 r_scbond_it 1.592 r_angle_refined_deg 1.353 r_mcangle_it 0.898 r_mcbond_it 0.515 r_nbtor_refined 0.297 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.172 r_symmetry_vdw_refined 0.136 r_symmetry_hbond_refined 0.125 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4866 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing