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Structure of Chloroperoxidase Compound 0
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CPO PDB ENTRY 1CPO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 22 % PEG3000, 0.1 M KBR, 0.1 M NA CITRATE PH 3.6
Crystal Properties Matthews coefficient Solvent content 2.6 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.01 α = 90 b = 150.42 β = 90 c = 99.59 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 20 95.6 0.11 10.9 4.2 185241 3 26.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.8 89.3 0.41 3.6 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CPO 1.75 19.79 44177 2102 95.6 0.198 0.197 0.1967 0.21 0.2091 RANDOM 21.61
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.83 -1.71 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.176 r_dihedral_angle_4_deg 15.228 r_dihedral_angle_3_deg 11.272 r_dihedral_angle_1_deg 4.927 r_scangle_it 1.55 r_angle_refined_deg 1.04 r_scbond_it 0.947 r_mcangle_it 0.604 r_mcbond_it 0.346 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.176 r_dihedral_angle_4_deg 15.228 r_dihedral_angle_3_deg 11.272 r_dihedral_angle_1_deg 4.927 r_scangle_it 1.55 r_angle_refined_deg 1.04 r_scbond_it 0.947 r_mcangle_it 0.604 r_mcbond_it 0.346 r_nbtor_refined 0.306 r_nbd_refined 0.182 r_symmetry_vdw_refined 0.133 r_symmetry_hbond_refined 0.09 r_xyhbond_nbd_refined 0.082 r_chiral_restr 0.065 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2316 Nucleic Acid Atoms Solvent Atoms 356 Heterogen Atoms 267
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling AMoRE phasing