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Crystal Structure of Hydroxycinnamoyl-CoA Hydratase-Lyase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UIY PDB ENTRY 1UIY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 PEG 20000 11% W/V PEG 550 MME 8% V/V 0.8M NA FORMATE BUTANE-1,4-DIOL 0,2% V/V 0.05M MES PH 5.6
Crystal Properties Matthews coefficient Solvent content 2.42 49.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 154.238 α = 90 b = 167.487 β = 90 c = 130.818 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 CCD ADSC CCD 2004-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 100 0.04 21.9 4.2 308927
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 100 0.33 3.3 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UIY 1.8 111.8 292487 15557 99.5 0.181 0.179 0.1798 0.215 0.2153 RANDOM 21.75
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.09 2.38 -1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.495 r_dihedral_angle_4_deg 21.878 r_dihedral_angle_3_deg 15.55 r_dihedral_angle_1_deg 5.86 r_scangle_it 4.598 r_scbond_it 2.924 r_angle_refined_deg 1.639 r_mcangle_it 1.634 r_mcbond_it 0.967 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.495 r_dihedral_angle_4_deg 21.878 r_dihedral_angle_3_deg 15.55 r_dihedral_angle_1_deg 5.86 r_scangle_it 4.598 r_scbond_it 2.924 r_angle_refined_deg 1.639 r_mcangle_it 1.634 r_mcbond_it 0.967 r_nbtor_refined 0.311 r_nbd_refined 0.216 r_symmetry_vdw_refined 0.166 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.141 r_symmetry_hbond_refined 0.13 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 23260 Nucleic Acid Atoms Solvent Atoms 1861 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing