☰ Navigation Tabs
Folding of S6 structures with divergent amino-acid composition: pathway flexibility within partly overlapping foldons
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1G1X PDB ENTRY 1G1X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP HANGING DROP 14% POLYETHYLENE GLYCOL 3350, 0.2M NA FORMATE, 4UL PROTEIN, 4UL RESERVOIR
Crystal Properties Matthews coefficient Solvent content 3.75 62.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.57 α = 90 b = 75.57 β = 90 c = 55.5 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2004-03-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 28.2 98.1 0.08 13.7 5.8 8252 44.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 99.3 0.45 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1G1X 2.3 25.55 8250 381 98.2 0.225 0.223 0.2148 0.274 0.261 RANDOM 37.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.017 0.508 1.017 -1.525
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.801 r_dihedral_angle_3_deg 17.591 r_dihedral_angle_4_deg 15.391 r_dihedral_angle_1_deg 5.753 r_scangle_it 3.007 r_scbond_it 1.818 r_mcangle_it 1.534 r_angle_refined_deg 1.27 r_mcbond_it 0.812 r_nbd_refined 0.218
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.801 r_dihedral_angle_3_deg 17.591 r_dihedral_angle_4_deg 15.391 r_dihedral_angle_1_deg 5.753 r_scangle_it 3.007 r_scbond_it 1.818 r_mcangle_it 1.534 r_angle_refined_deg 1.27 r_mcbond_it 0.812 r_nbd_refined 0.218 r_xyhbond_nbd_refined 0.203 r_nbtor_refined 0.183 r_symmetry_vdw_refined 0.183 r_symmetry_hbond_refined 0.132 r_chiral_restr 0.081 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 916 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing