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Human Thyroid hormone receptor beta ligand binding domain in complex with KB131084
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.45 M AMMONIUMSULFATE, 100 MMTRIS PH8.0, 100MM NDSB
Crystal Properties Matthews coefficient Solvent content 2.37 47.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.212 α = 90 b = 107.422 β = 90 c = 67.208 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 99.9 0.11 7.7 5.1 14513 20.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.2 40 14450 725 99.4 0.2297 0.2297 0.2213 0.2729 0.2647 RANDOM 31.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.26 -10.571 5.311
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 57.7 c_scangle_it 1.82 c_mcangle_it 1.41 c_scbond_it 1.19 c_mcbond_it 0.82 c_bond_d c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 57.7 c_scangle_it 1.82 c_mcangle_it 1.41 c_scbond_it 1.19 c_mcbond_it 0.82 c_bond_d c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1965 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms 24
Software Software Software Name Purpose CNS refinement