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The T199D Mutant of Stearoyl Acyl Carrier Protein Desaturase from Ricinus Communis (Castor Bean)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AFR PDB ENTRY 1AFR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.4 0.08M CACODYLATE PH 5.4 0.2M MAGNESIUM ACETATE 75MM AMMONIUM SULFATE 16-18% PEG 4000 0.2% BOG
Crystal Properties Matthews coefficient Solvent content 2.42 48.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.049 α = 90 b = 145.768 β = 90 c = 193.245 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 40 98.4 0.09 9.6 3.3 68082 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.79 98.4 0.47 2.3 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1AFR 2.65 40 68033 3388 98.4 0.242 0.24 0.2323 0.272 0.2622 RANDOM 32.87
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.51 -1.08 3.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.929 r_dihedral_angle_4_deg 22.907 r_dihedral_angle_3_deg 17.554 r_dihedral_angle_1_deg 4.507 r_angle_refined_deg 1.371 r_scangle_it 1.099 r_scbond_it 0.844 r_mcangle_it 0.483 r_mcbond_it 0.388 r_symmetry_vdw_refined 0.376
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.929 r_dihedral_angle_4_deg 22.907 r_dihedral_angle_3_deg 17.554 r_dihedral_angle_1_deg 4.507 r_angle_refined_deg 1.371 r_scangle_it 1.099 r_scbond_it 0.844 r_mcangle_it 0.483 r_mcbond_it 0.388 r_symmetry_vdw_refined 0.376 r_symmetry_hbond_refined 0.319 r_nbtor_refined 0.316 r_nbd_refined 0.242 r_xyhbond_nbd_refined 0.185 r_chiral_restr 0.09 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16885 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing