☰ Navigation Tabs
P450 BM3 Heme domain in complex with DMSO
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BU7 PDB ENTRY 1BU7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.04 M ZINC ACETATE, 15 % (W/V) PEG3350, 14 % (V/V) DMSO
Crystal Properties Matthews coefficient Solvent content 2.7 54.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.765 α = 90 b = 86.849 β = 90 c = 159.408 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 38.35 100 0.08 15.33 6.64 125177
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 100 0.71 2.3 6.54
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BU7 1.7 36.04 118744 6340 100 0.171 0.169 0.1793 0.199 0.2056 RANDOM 29.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 0.72 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.887 r_dihedral_angle_4_deg 18.506 r_dihedral_angle_3_deg 13.064 r_dihedral_angle_1_deg 5.86 r_scangle_it 5.362 r_scbond_it 4.072 r_mcangle_it 3.612 r_mcbond_it 2.882 r_angle_refined_deg 1.512 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.887 r_dihedral_angle_4_deg 18.506 r_dihedral_angle_3_deg 13.064 r_dihedral_angle_1_deg 5.86 r_scangle_it 5.362 r_scbond_it 4.072 r_mcangle_it 3.612 r_mcbond_it 2.882 r_angle_refined_deg 1.512 r_nbtor_refined 0.309 r_nbd_refined 0.219 r_symmetry_hbond_refined 0.202 r_symmetry_vdw_refined 0.201 r_xyhbond_nbd_refined 0.164 r_chiral_restr 0.113 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7328 Nucleic Acid Atoms Solvent Atoms 955 Heterogen Atoms 109
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing