X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2J3GPDP ENTRY 2J3G

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.5451.27

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 99.04α = 90
b = 99.04β = 90
c = 142γ = 120
Symmetry
Space GroupP 32

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2005-02-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID29ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9519.698.50.07156.4111804

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDP ENTRY 2J3G1.951510754956611000.1780.1760.21RANDOM38.77
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.860.430.86-1.28
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.264
r_dihedral_angle_4_deg18.773
r_dihedral_angle_3_deg14.451
r_dihedral_angle_1_deg5.855
r_scangle_it2.065
r_scbond_it1.418
r_mcangle_it1.324
r_angle_refined_deg1.091
r_mcbond_it0.88
r_nbtor_refined0.323
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.264
r_dihedral_angle_4_deg18.773
r_dihedral_angle_3_deg14.451
r_dihedral_angle_1_deg5.855
r_scangle_it2.065
r_scbond_it1.418
r_mcangle_it1.324
r_angle_refined_deg1.091
r_mcbond_it0.88
r_nbtor_refined0.323
r_symmetry_hbond_refined0.252
r_xyhbond_nbd_refined0.22
r_nbd_refined0.217
r_symmetry_vdw_refined0.199
r_chiral_restr0.091
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10249
Nucleic Acid Atoms
Solvent Atoms834
Heterogen Atoms167

Software

Software
Software NamePurpose
REFMACrefinement
AMoREphasing