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High Resolution Crystal Structure of CBM32 from a N-acetyl-beta- hexosaminidase in complex with lacNAc
Crystallization Crystal Properties Matthews coefficient Solvent content 3.03 59.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.377 α = 90 b = 77.377 β = 90 c = 73.421 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 20 99.6 0.1 8.6 4.36 9130 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 20 8683 434 99.6 0.179 0.175 0.252 0.2382 RANDOM 27.75
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 -0.34 0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.1 r_scangle_it 4.129 r_scbond_it 2.71 r_angle_refined_deg 1.696 r_mcangle_it 1.571 r_mcbond_it 0.877 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.165 r_symmetry_vdw_refined 0.15 r_symmetry_hbond_refined 0.131
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.1 r_scangle_it 4.129 r_scbond_it 2.71 r_angle_refined_deg 1.696 r_mcangle_it 1.571 r_mcbond_it 0.877 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.165 r_symmetry_vdw_refined 0.15 r_symmetry_hbond_refined 0.131 r_chiral_restr 0.107 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1093 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement