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Ad37 fibre head in complex with CAR D1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UXA PDB ENTRIES 1UXA, 1KAC experimental model PDB 1KAC PDB ENTRIES 1UXA, 1KAC
Crystallization Crystal Properties Matthews coefficient Solvent content 2.6 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.78 α = 90 b = 131.78 β = 90 c = 131.78 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 30 99 0.07 7 59884
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1UXA, 1KAC 1.5 93.25 56854 3029 98.9 0.149 0.148 0.146 0.169 0.1662 RANDOM 15.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.011 r_dihedral_angle_4_deg 20.988 r_dihedral_angle_3_deg 11.043 r_dihedral_angle_1_deg 6.274 r_scangle_it 3.377 r_scbond_it 2.381 r_mcangle_it 1.5 r_angle_refined_deg 1.309 r_mcbond_it 0.993 r_nbd_refined 0.327
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.011 r_dihedral_angle_4_deg 20.988 r_dihedral_angle_3_deg 11.043 r_dihedral_angle_1_deg 6.274 r_scangle_it 3.377 r_scbond_it 2.381 r_mcangle_it 1.5 r_angle_refined_deg 1.309 r_mcbond_it 0.993 r_nbd_refined 0.327 r_nbtor_refined 0.326 r_symmetry_hbond_refined 0.173 r_symmetry_vdw_refined 0.171 r_xyhbond_nbd_refined 0.113 r_chiral_restr 0.089 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2375 Nucleic Acid Atoms Solvent Atoms 287 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing