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Crystal structure of a the active conformation of the kinase domain of focal adhesion kinase with a phosphorylated activation loop.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MP8 PDB ENTRY 1MP8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 26% PEG4K, 0.2M LISO4, 0.1M TRIS PH8.5, 10MM TCEP, pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.23 44.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.312 α = 90 b = 71.809 β = 90 c = 86.939 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-09-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 92.3 0.1 12.1 4.1 11899
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 56.1 0.32 2.51 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MP8 2.3 43.48 11293 568 92 0.217 0.214 0.263 0.2749 RANDOM 39.27
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.17 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.672 r_dihedral_angle_4_deg 18.432 r_dihedral_angle_3_deg 15.951 r_dihedral_angle_1_deg 6.059 r_scangle_it 2.16 r_scbond_it 1.403 r_angle_refined_deg 1.265 r_mcangle_it 0.994 r_mcbond_it 0.723 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.672 r_dihedral_angle_4_deg 18.432 r_dihedral_angle_3_deg 15.951 r_dihedral_angle_1_deg 6.059 r_scangle_it 2.16 r_scbond_it 1.403 r_angle_refined_deg 1.265 r_mcangle_it 0.994 r_mcbond_it 0.723 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.221 r_nbd_refined 0.199 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.165 r_metal_ion_refined 0.118 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2232 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing