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L-ficolin complexed to N-acetyl-mannosamine
Crystallization Crystal Properties Matthews coefficient Solvent content 2.55 51.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.94 α = 90 b = 96.94 β = 90 c = 139.47 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 20 97.6 0.08 11.6 3.2 33923
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.85 15 31942 1681 100 0.196 0.193 0.2018 0.248 0.2515 RANDOM 40.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 -0.3 -0.61 0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.768 r_dihedral_angle_4_deg 20.552 r_dihedral_angle_3_deg 18.408 r_dihedral_angle_1_deg 6.202 r_scangle_it 1.58 r_angle_refined_deg 1.394 r_scbond_it 1.066 r_mcangle_it 0.998 r_mcbond_it 0.596 r_nbtor_refined 0.336
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.768 r_dihedral_angle_4_deg 20.552 r_dihedral_angle_3_deg 18.408 r_dihedral_angle_1_deg 6.202 r_scangle_it 1.58 r_angle_refined_deg 1.394 r_scbond_it 1.066 r_mcangle_it 0.998 r_mcbond_it 0.596 r_nbtor_refined 0.336 r_symmetry_vdw_refined 0.294 r_symmetry_hbond_refined 0.263 r_nbd_refined 0.252 r_xyhbond_nbd_refined 0.194 r_chiral_restr 0.098 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10328 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 186
Software Software Software Name Purpose REFMAC refinement