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Molecular Basis of AKAP Specificity for PKA Regulatory Subunits
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other RII APO CRYSTAL STRUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 1 M TRI-SODIUM CITRATE, 0.1 M TRIS-HCL PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.36 47.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.352 α = 90 b = 45.251 β = 90 c = 56.837 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD CYLINDRICAL GRAZING INCIDENCE MIRROR 2005-07-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 35.4 99.7 0.06 16 4.35 26863 2.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 99.8 0.34 2.5 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT RII APO CRYSTAL STRUCTURE 1.3 28.42 25468 1348 99.7 0.166 0.164 0.1711 0.194 0.2037 RANDOM 15.24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 0.11 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.064 r_dihedral_angle_3_deg 11.012 r_dihedral_angle_4_deg 9.621 r_scangle_it 5.582 r_scbond_it 3.927 r_dihedral_angle_1_deg 3.787 r_mcangle_it 2.706 r_mcbond_it 2.167 r_angle_refined_deg 1.805 r_nbtor_refined 0.324
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.064 r_dihedral_angle_3_deg 11.012 r_dihedral_angle_4_deg 9.621 r_scangle_it 5.582 r_scbond_it 3.927 r_dihedral_angle_1_deg 3.787 r_mcangle_it 2.706 r_mcbond_it 2.167 r_angle_refined_deg 1.805 r_nbtor_refined 0.324 r_nbd_refined 0.278 r_xyhbond_nbd_refined 0.209 r_symmetry_vdw_refined 0.166 r_chiral_restr 0.144 r_symmetry_hbond_refined 0.107 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 800 Nucleic Acid Atoms Solvent Atoms 99 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing