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structure of Moco Carrier Protein from Chlamydomonas reinhardtii
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IZ6 PDB ENTRY 2IZ6
Crystallization Crystal Properties Matthews coefficient Solvent content 2.4 47.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.558 α = 90 b = 124.548 β = 90 c = 74.793 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.32 62.3 99.8 0.07 5.7 6.8 16385 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.32 2.46 100 0.36 2.1 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2IZ6 2.32 62 13324 701 99.9 0.185 0.181 0.2055 0.263 0.2778 RANDOM 43.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 -2.98 2.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 46.515 r_dihedral_angle_4_deg 19.433 r_dihedral_angle_3_deg 17.477 r_dihedral_angle_1_deg 8.75 r_scangle_it 3.44 r_scbond_it 2.235 r_angle_refined_deg 1.826 r_mcangle_it 1.467 r_mcbond_it 1.239 r_angle_other_deg 0.946
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 46.515 r_dihedral_angle_4_deg 19.433 r_dihedral_angle_3_deg 17.477 r_dihedral_angle_1_deg 8.75 r_scangle_it 3.44 r_scbond_it 2.235 r_angle_refined_deg 1.826 r_mcangle_it 1.467 r_mcbond_it 1.239 r_angle_other_deg 0.946 r_symmetry_vdw_refined 0.259 r_xyhbond_nbd_refined 0.258 r_nbd_refined 0.249 r_symmetry_hbond_refined 0.24 r_nbd_other 0.193 r_symmetry_vdw_other 0.186 r_nbtor_refined 0.17 r_chiral_restr 0.107 r_nbtor_other 0.093 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2255 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling