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Structure of complex between the 3rd LIM domain of TES and the EVH1 domain of Mena
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EVH PDB ENTRY 1EVH WITHOUT FP4 LIGAND
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 100MM BISTRIS PH 6.5, 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.25 44.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.548 α = 90 b = 292.927 β = 90 c = 37.126 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRROR 2004-02-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 60 98.5 0.1 5.4 12.9 39369 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.48 90.6 0.23 2.7 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1EVH WITHOUT FP4 LIGAND 2.35 64.96 31115 1587 100 0.202 0.199 0.259 RANDOM 27.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.098 -0.022 0.121
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.233 r_dihedral_angle_4_deg 16.502 r_dihedral_angle_3_deg 15.296 r_dihedral_angle_1_deg 8.595 r_scangle_it 1.885 r_angle_refined_deg 1.346 r_scbond_it 1.174 r_mcangle_it 0.961 r_mcbond_it 0.554 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.233 r_dihedral_angle_4_deg 16.502 r_dihedral_angle_3_deg 15.296 r_dihedral_angle_1_deg 8.595 r_scangle_it 1.885 r_angle_refined_deg 1.346 r_scbond_it 1.174 r_mcangle_it 0.961 r_mcbond_it 0.554 r_nbtor_refined 0.301 r_nbd_refined 0.218 r_symmetry_vdw_refined 0.188 r_xyhbond_nbd_refined 0.147 r_symmetry_hbond_refined 0.137 r_chiral_restr 0.126 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5387 Nucleic Acid Atoms Solvent Atoms 384 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing