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SHORT CHAIN SPECIFIC ACYL-COA OXIDASE FROM ARABIDOPSIS THALIANA, ACX4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IX5 PDB ENTRY 2IX5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.1 M BIS-TRIS-PROPANE PH 7.0, 6% PEG8000, 8% GLYCEROL
Crystal Properties Matthews coefficient Solvent content 3 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 198.6 α = 90 b = 198.6 β = 90 c = 150.4 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.9 30 99.8 0.15 7.4 9.2 27647 25.19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.9 4.1 99.9 0.32 2 9.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2IX5 3.9 171.5 28462 3015 99.7 0.247 0.247 0.2051 0.251 0.2122 RANDOM 55.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 0.27 0.55 -0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.632 r_dihedral_angle_3_deg 15.211 r_dihedral_angle_4_deg 14.001 r_dihedral_angle_1_deg 3.761 r_angle_refined_deg 0.88 r_nbtor_refined 0.293 r_symmetry_vdw_refined 0.199 r_nbd_refined 0.185 r_xyhbond_nbd_refined 0.131 r_scangle_it 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.632 r_dihedral_angle_3_deg 15.211 r_dihedral_angle_4_deg 14.001 r_dihedral_angle_1_deg 3.761 r_angle_refined_deg 0.88 r_nbtor_refined 0.293 r_symmetry_vdw_refined 0.199 r_nbd_refined 0.185 r_xyhbond_nbd_refined 0.131 r_scangle_it 0.092 r_scbond_it 0.062 r_chiral_restr 0.059 r_mcangle_it 0.043 r_symmetry_hbond_refined 0.036 r_mcbond_it 0.028 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19098 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 318
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing