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Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BMJ PDB ENTRY 2BMJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 0.1M PCB PH6.0, 30% PEG 1000
Crystal Properties Matthews coefficient Solvent content 1.94 36.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.256 α = 90 b = 62.146 β = 90 c = 67.498 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE 2006-05-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 20.72 99.3 0.06 24.8 8.7 24972
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 95.6 0.34 2.7 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BMJ 1.5 45.74 23903 1019 99.3 0.152 0.15 0.214 0.2239 RANDOM 21.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 -0.22 -0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.576 r_dihedral_angle_4_deg 22.009 r_dihedral_angle_3_deg 11.29 r_scangle_it 7.458 r_scbond_it 5.884 r_dihedral_angle_1_deg 5.645 r_mcangle_it 4.628 r_mcbond_it 3.802 r_angle_refined_deg 1.47 r_angle_other_deg 1.441
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.576 r_dihedral_angle_4_deg 22.009 r_dihedral_angle_3_deg 11.29 r_scangle_it 7.458 r_scbond_it 5.884 r_dihedral_angle_1_deg 5.645 r_mcangle_it 4.628 r_mcbond_it 3.802 r_angle_refined_deg 1.47 r_angle_other_deg 1.441 r_nbd_refined 0.333 r_symmetry_vdw_other 0.316 r_symmetry_vdw_refined 0.267 r_nbd_other 0.221 r_symmetry_hbond_refined 0.21 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.11 r_nbtor_other 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1334 Nucleic Acid Atoms Solvent Atoms 221 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing