☰ Navigation Tabs
Unbound glutaminyl cyclotransferase from Carica papaya.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 CRYSTALS WERE OBTAINED BY THE SITTING-DROP VAPOUR DIFFUSION METHOD EMPLOYING CRYSCHEM-PLATES FROM EQUIVOLUMETRIC DROPS CONTAINING PROTEIN SOLUTION (46-52 MG/ML IN 10MM HEPES PH 7.0, 150MM NACL) AND 28-32% PEG4000, 0.2M MGCL2, 0.1M TRIS-HCL PH 8.5 AS PRECIPITATING SOLUTION.
Crystal Properties Matthews coefficient Solvent content 2.58 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.74 α = 90 b = 97.74 β = 90 c = 64.974 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 39 100 0.05 18.2 7.3 46684 1.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 99.9 0.38 5.4 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.6 39.04 45943 710 100 0.148 0.148 0.1527 0.168 0.1675 RANDOM 23.06
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 0.26 0.51 -0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.87 r_dihedral_angle_4_deg 16.869 r_dihedral_angle_3_deg 12.238 r_dihedral_angle_1_deg 6.492 r_scangle_it 3.435 r_scbond_it 2.349 r_angle_refined_deg 1.533 r_mcangle_it 1.396 r_mcbond_it 1.006 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.87 r_dihedral_angle_4_deg 16.869 r_dihedral_angle_3_deg 12.238 r_dihedral_angle_1_deg 6.492 r_scangle_it 3.435 r_scbond_it 2.349 r_angle_refined_deg 1.533 r_mcangle_it 1.396 r_mcbond_it 1.006 r_nbtor_refined 0.316 r_symmetry_vdw_refined 0.209 r_nbd_refined 0.203 r_symmetry_hbond_refined 0.163 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.123 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2092 Nucleic Acid Atoms Solvent Atoms 309 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling XPREP phasing SHELXD phasing SHELXE phasing