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Crystal structure of AviGT4, a glycosyltransferase involved in Avilamycin A biosynthesis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 18% PEG3350, 0.2M LI2SO4, 0.1M MES PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.2 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.521 α = 90 b = 73.829 β = 90.65 c = 92.173 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD MARRESEARCH 2005-02-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 73.92 97.9 0.07 22.8 6.9 42291 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 86.9 0.22 5.5 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 19.98 35293 1902 99.7 0.173 0.17 0.1744 0.233 0.235 RANDOM 14.02
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.02 -0.02 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.68 r_dihedral_angle_4_deg 19.869 r_dihedral_angle_3_deg 14.726 r_dihedral_angle_1_deg 7.753 r_scangle_it 4.218 r_scbond_it 2.757 r_angle_refined_deg 1.686 r_mcangle_it 1.566 r_mcbond_it 1.071 r_symmetry_hbond_refined 0.363
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.68 r_dihedral_angle_4_deg 19.869 r_dihedral_angle_3_deg 14.726 r_dihedral_angle_1_deg 7.753 r_scangle_it 4.218 r_scbond_it 2.757 r_angle_refined_deg 1.686 r_mcangle_it 1.566 r_mcbond_it 1.071 r_symmetry_hbond_refined 0.363 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.222 r_nbd_refined 0.197 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.112 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5042 Nucleic Acid Atoms Solvent Atoms 440 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SOLVE phasing