☰ Navigation Tabs
The structures of Penicillium vitale catalase: resting state, oxidised state (compound I) and complex with aminotriazole
Crystallization Crystal Properties Matthews coefficient Solvent content 2.56 51.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.44 α = 90 b = 142.44 β = 90 c = 132.23 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE RIGAKU RAXIS II M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 120 99 0.07 5.5 5 156337
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.73 64.3 0.29 3.5 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.71 119.52 156337 8285 98.9 0.131 0.129 0.1387 0.154 0.1616 RANDOM 11.94
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 -0.1 -0.21 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.277 r_dihedral_angle_4_deg 13.999 r_dihedral_angle_3_deg 11.01 r_dihedral_angle_1_deg 6.734 r_scangle_it 3.736 r_scbond_it 2.594 r_angle_refined_deg 1.712 r_mcangle_it 1.521 r_mcbond_it 1.086 r_angle_other_deg 1.037
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.277 r_dihedral_angle_4_deg 13.999 r_dihedral_angle_3_deg 11.01 r_dihedral_angle_1_deg 6.734 r_scangle_it 3.736 r_scbond_it 2.594 r_angle_refined_deg 1.712 r_mcangle_it 1.521 r_mcbond_it 1.086 r_angle_other_deg 1.037 r_symmetry_vdw_refined 0.261 r_symmetry_vdw_other 0.254 r_symmetry_hbond_refined 0.23 r_nbd_refined 0.225 r_nbd_other 0.211 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.173 r_nbtor_other 0.109 r_chiral_restr 0.108 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_gen_planes_other 0.004 r_bond_other_d 0.003 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10676 Nucleic Acid Atoms Solvent Atoms 1490 Heterogen Atoms 269
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling