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Chlamydia trachomatis LpxD with 25mM UDPGlcNAc (Complex I)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 PROTEIN INCUBATED WITH 25MM UDPGLCNAC AND CRYSTALLIZED FROM 1.3M AMMONIUM SULFATE, 0.1M MES, PH 6.5, 2% PEG 400, AND 1MM TCEP.
Crystal Properties Matthews coefficient Solvent content 2.84 56.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.805 α = 90 b = 98.805 β = 90 c = 283.082 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2004-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 91.1 0.08 11.9 4.3 65635 47.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 95.1 0.61 1.3 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 50 61869 3302 90.4 0.209 0.206 0.2728 0.256 0.3149 RANDOM 61.87
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.71 3.71 -7.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.735 r_dihedral_angle_4_deg 19.548 r_dihedral_angle_3_deg 17.933 r_dihedral_angle_1_deg 6.349 r_scangle_it 1.666 r_angle_refined_deg 1.344 r_scbond_it 1.115 r_mcangle_it 0.709 r_mcbond_it 0.456 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.735 r_dihedral_angle_4_deg 19.548 r_dihedral_angle_3_deg 17.933 r_dihedral_angle_1_deg 6.349 r_scangle_it 1.666 r_angle_refined_deg 1.344 r_scbond_it 1.115 r_mcangle_it 0.709 r_mcbond_it 0.456 r_nbtor_refined 0.305 r_nbd_refined 0.206 r_symmetry_vdw_refined 0.182 r_xyhbond_nbd_refined 0.173 r_symmetry_hbond_refined 0.166 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7911 Nucleic Acid Atoms Solvent Atoms 495 Heterogen Atoms 131
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling