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Dihydroxyacetone kinase operon activator DhaS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 THE CONCENTRATED PROTEIN (20 MG/ML) WAS MIXED WITH BUFFER CONTAINING 50 MM NA-CACODYLATE PH 6.0, 1.7 M AMMONIUM SULFATE, 0.015 M MG-ACETATE IN A 1:1 RATIO.
Crystal Properties Matthews coefficient Solvent content 1.9 34.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.459 α = 90 b = 46.284 β = 90 c = 171.939 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 40 99.2 0.05 16 4.4 45492 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.65 100 0.18 0.07 4.01
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 1.6 40 45492 2013 99.3 0.197 0.195 0.1991 0.23 0.2274 RANDOM 23.23
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.51 0.9 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.076 r_dihedral_angle_4_deg 24.349 r_dihedral_angle_3_deg 16.38 r_dihedral_angle_1_deg 5.751 r_scangle_it 4.032 r_scbond_it 2.601 r_mcangle_it 1.901 r_angle_refined_deg 1.682 r_mcbond_it 1.313 r_nbtor_refined 0.329
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.076 r_dihedral_angle_4_deg 24.349 r_dihedral_angle_3_deg 16.38 r_dihedral_angle_1_deg 5.751 r_scangle_it 4.032 r_scbond_it 2.601 r_mcangle_it 1.901 r_angle_refined_deg 1.682 r_mcbond_it 1.313 r_nbtor_refined 0.329 r_xyhbond_nbd_refined 0.241 r_nbd_refined 0.239 r_symmetry_hbond_refined 0.229 r_symmetry_vdw_refined 0.19 r_chiral_restr 0.107 r_bond_refined_d 0.008 r_gen_planes_refined 0.001 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3034 Nucleic Acid Atoms Solvent Atoms 294 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling