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Dihydroxyacetone kinase operon co-activator Dha-DhaQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 0.1 M SODIUM ACETATE TRIHYDRATE, PH 4.5, 2 M AMMONIUM SULFATE
Crystal Properties Matthews coefficient Solvent content 3.54 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.897 α = 90 b = 99.897 β = 90 c = 188.566 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 40 99.9 0.1 11.17 5.39 77167 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.04 99.9 0.29 5.66 4.54
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.96 30 76689 1583 99.9 0.182 0.181 0.1813 0.209 0.2041 RANDOM 29.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 0.33 0.67 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.142 r_dihedral_angle_4_deg 28.184 r_dihedral_angle_3_deg 16.03 r_dihedral_angle_1_deg 6.309 r_scangle_it 3.949 r_scbond_it 2.682 r_mcangle_it 1.752 r_angle_refined_deg 1.524 r_mcbond_it 1.363 r_symmetry_hbond_refined 0.395
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.142 r_dihedral_angle_4_deg 28.184 r_dihedral_angle_3_deg 16.03 r_dihedral_angle_1_deg 6.309 r_scangle_it 3.949 r_scbond_it 2.682 r_mcangle_it 1.752 r_angle_refined_deg 1.524 r_mcbond_it 1.363 r_symmetry_hbond_refined 0.395 r_nbtor_refined 0.329 r_nbd_refined 0.234 r_symmetry_vdw_refined 0.213 r_chiral_restr 0.201 r_xyhbond_nbd_refined 0.177 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5125 Nucleic Acid Atoms Solvent Atoms 338 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing