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CRYSTAL STRUCTURE OF A PUTATIVE TRNA-(MS(2)IO(6)A)-HYDROXYLASE (PP_2188) FROM PSEUDOMONAS PUTIDA KT2440 AT 2.05 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 293 30.0% Ethylene-Glycol, 0.1M NaAcetate, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.94 36.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.274 α = 90 b = 70.215 β = 90 c = 84.285 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-08-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9740, 0.9799, 0.9798 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 28.796 99.9 0.102 0.102 6.6 3.4 23439
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.1 99.9 0.817 0.817 0.9 3.5 1690
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.05 28.796 23393 1201 99.77 0.174 0.171 0.18 0.229 0.2366 RANDOM 30.129
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.02 1.32 -2.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.637 r_dihedral_angle_4_deg 15.829 r_dihedral_angle_3_deg 12.919 r_scangle_it 6.339 r_scbond_it 5.069 r_dihedral_angle_1_deg 3.281 r_mcangle_it 2.702 r_mcbond_it 2.139 r_angle_refined_deg 1.599 r_angle_other_deg 0.852
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.637 r_dihedral_angle_4_deg 15.829 r_dihedral_angle_3_deg 12.919 r_scangle_it 6.339 r_scbond_it 5.069 r_dihedral_angle_1_deg 3.281 r_mcangle_it 2.702 r_mcbond_it 2.139 r_angle_refined_deg 1.599 r_angle_other_deg 0.852 r_mcbond_other 0.646 r_symmetry_vdw_other 0.275 r_symmetry_hbond_refined 0.251 r_xyhbond_nbd_refined 0.23 r_nbd_refined 0.22 r_nbtor_refined 0.187 r_nbd_other 0.18 r_symmetry_vdw_refined 0.111 r_chiral_restr 0.093 r_nbtor_other 0.092 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3063 Nucleic Acid Atoms Solvent Atoms 222 Heterogen Atoms 78
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELXD phasing SHARP phasing