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Crystal structure of a protein with unknown function from DUF155 family (YP_292156.1) from Prochlorococcus sp. NATL2A at 1.80 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 8 277 1.0M LiCl, 10.0% PEG-6000, 0.1M TRIS, pH 8.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.5 50.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.723 α = 90 b = 81.021 β = 90 c = 124.352 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-08-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9740, 0.9800, 0.9799 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 67.884 99.7 0.06 0.06 8 3.6 56456 26.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 100 0.665 0.665 1.1 3.6 4097
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 67.884 56272 2857 99.29 0.181 0.179 0.1883 0.213 0.2245 RANDOM 33.859
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.65 0.54 -1.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.174 r_dihedral_angle_4_deg 18.769 r_dihedral_angle_3_deg 10.709 r_scangle_it 6.644 r_scbond_it 4.481 r_dihedral_angle_1_deg 3.914 r_mcangle_it 2.839 r_mcbond_it 2.031 r_angle_refined_deg 1.633 r_angle_other_deg 0.923
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.174 r_dihedral_angle_4_deg 18.769 r_dihedral_angle_3_deg 10.709 r_scangle_it 6.644 r_scbond_it 4.481 r_dihedral_angle_1_deg 3.914 r_mcangle_it 2.839 r_mcbond_it 2.031 r_angle_refined_deg 1.633 r_angle_other_deg 0.923 r_mcbond_other 0.687 r_nbd_refined 0.214 r_symmetry_vdw_refined 0.204 r_symmetry_vdw_other 0.198 r_nbtor_refined 0.181 r_nbd_other 0.178 r_symmetry_hbond_refined 0.176 r_xyhbond_nbd_refined 0.169 r_chiral_restr 0.092 r_nbtor_other 0.088 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3890 Nucleic Acid Atoms Solvent Atoms 386 Heterogen Atoms 51
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling autoSHARP phasing