☰ Navigation Tabs
Crystal Structure of Escherichia coli RNase T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 2.3 M ammonium sulfate, 0.1 M MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.43 72.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 213.14 α = 90 b = 213.14 β = 90 c = 149.15 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRANDEIS - B4 2003-04-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12C 0.9786, 0.9788 NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 30 99.5 0.092 28.9 13 31325
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.21 95.1 0.696 2.1 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3.1 29.83 26264 1418 88.3 0.19735 0.1955 0.23143 0.2361 RANDOM 77.366
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 -0.48 0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.72 r_dihedral_angle_4_deg 19.498 r_dihedral_angle_3_deg 18.483 r_dihedral_angle_1_deg 5.943 r_scangle_it 2.989 r_scbond_it 1.841 r_angle_refined_deg 1.369 r_mcangle_it 1.22 r_mcbond_it 1.015 r_nbtor_refined 0.322
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.72 r_dihedral_angle_4_deg 19.498 r_dihedral_angle_3_deg 18.483 r_dihedral_angle_1_deg 5.943 r_scangle_it 2.989 r_scbond_it 1.841 r_angle_refined_deg 1.369 r_mcangle_it 1.22 r_mcbond_it 1.015 r_nbtor_refined 0.322 r_nbd_refined 0.236 r_symmetry_vdw_refined 0.184 r_xyhbond_nbd_refined 0.134 r_symmetry_hbond_refined 0.103 r_chiral_restr 0.085 r_bond_refined_d 0.013 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6039 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement CBASS data collection DENZO data reduction SCALEPACK data scaling SnB phasing