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Influenza A virus nucleoprotein NP at 3.2A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 100mM Tris HCl, 3% PEG 8000, 10% Glycerol, 10mM DTT, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.36 47.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.099 α = 90 b = 135.105 β = 90 c = 195.183 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-06-12 M SINGLE WAVELENGTH 2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.9792 NSLS X29A 2 SYNCHROTRON CHESS BEAMLINE F2 1.0397, 1.0064, 0.9792 CHESS F2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 30 99.3 0.069 13.2 4.1 26880 13.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.2 3.31 97.9 0.429 3 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 3.2 30 25500 1297 100 0.27341 0.27112 0.2535 0.31814 0.3102 RANDOM 74.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.53 -0.11 1.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.773 r_dihedral_angle_4_deg 17.879 r_dihedral_angle_3_deg 17.305 r_scangle_it 4.794 r_dihedral_angle_1_deg 4.598 r_scbond_it 3.019 r_mcangle_it 2.456 r_angle_refined_deg 1.703 r_mcbond_it 1.446 r_nbtor_refined 0.336
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.773 r_dihedral_angle_4_deg 17.879 r_dihedral_angle_3_deg 17.305 r_scangle_it 4.794 r_dihedral_angle_1_deg 4.598 r_scbond_it 3.019 r_mcangle_it 2.456 r_angle_refined_deg 1.703 r_mcbond_it 1.446 r_nbtor_refined 0.336 r_symmetry_vdw_refined 0.322 r_nbd_refined 0.297 r_xyhbond_nbd_refined 0.187 r_symmetry_hbond_refined 0.161 r_chiral_restr 0.097 r_bond_refined_d 0.019 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10162 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction SCALEPACK data scaling SHARP phasing