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Origin binding domain of the SV40 large T antigen (residues 131-259). P21 crystal form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.1 300 20 mM NaSCN, 10% P4K, 0.1 Tris, pH 8.1, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.06 40.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.715 α = 90 b = 56.633 β = 97.13 c = 59.889 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV mirrors 2003-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 59.76 98.5 0.036 33.9 3.4 39574 39574 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.55 94.2 0.165 7.7 3753
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT NONE 1.5 59.76 37588 1971 98.51 0.17901 0.17901 0.17772 0.1807 0.20427 0.208 RANDOM 16.404
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 0.08 0.08 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.289 r_scangle_it 3.445 r_scbond_it 2.137 r_mcangle_it 1.512 r_angle_refined_deg 1.422 r_mcbond_it 0.857 r_angle_other_deg 0.809 r_symmetry_vdw_other 0.305 r_nbd_other 0.246 r_nbd_refined 0.209
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.289 r_scangle_it 3.445 r_scbond_it 2.137 r_mcangle_it 1.512 r_angle_refined_deg 1.422 r_mcbond_it 0.857 r_angle_other_deg 0.809 r_symmetry_vdw_other 0.305 r_nbd_other 0.246 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.207 r_symmetry_hbond_refined 0.099 r_chiral_restr 0.094 r_xyhbond_nbd_refined 0.094 r_nbtor_other 0.083 r_bond_refined_d 0.012 r_gen_planes_other 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2054 Nucleic Acid Atoms Solvent Atoms 251 Heterogen Atoms
Software Software Software Name Purpose CrystalClear data collection PHASES phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling