☰ Navigation Tabs
Structure of the Pyocyanin Biosynthetic Protein PhzM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 The well solution contained 18-21% PEG 3350, 0.1M magnesium chloride, 0.1M MOPS, pH 7.0. The drops were formed by mixing equal volumes of protein (13.5 mg/ml) and well solution, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.47 50.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.97 α = 97.47 b = 62.41 β = 105.37 c = 68.75 γ = 108.09
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ Blue Max-flux confocal 2006-08-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.541
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.4 94.2 0.11 11.3 7.36 60747 60747 32.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 90.7 0.371 2.6 7.31 5841
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 20 57471 3079 93.94 0.1963 0.19354 0.1987 0.24739 0.249 RANDOM 32.601
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.27 -0.74 -1.1 0.08 -0.23 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.09 r_dihedral_angle_4_deg 18.249 r_dihedral_angle_3_deg 17.572 r_dihedral_angle_1_deg 5.821 r_scangle_it 4.458 r_scbond_it 3.004 r_mcangle_it 1.914 r_angle_refined_deg 1.744 r_mcbond_it 1.342 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.09 r_dihedral_angle_4_deg 18.249 r_dihedral_angle_3_deg 17.572 r_dihedral_angle_1_deg 5.821 r_scangle_it 4.458 r_scbond_it 3.004 r_mcangle_it 1.914 r_angle_refined_deg 1.744 r_mcbond_it 1.342 r_nbtor_refined 0.309 r_nbd_refined 0.227 r_symmetry_vdw_refined 0.226 r_xyhbond_nbd_refined 0.182 r_symmetry_hbond_refined 0.138 r_chiral_restr 0.133 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5040 Nucleic Acid Atoms Solvent Atoms 512 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection d*TREK data reduction d*TREK data scaling RESOLVE phasing