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Crystal structure of Thermoanaerobacter tengcongensis ribose binding protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 290 0.1M Na Citrate, pH 4.0, 0.1M Potassium Phosphate Mono-Basic, 50% PEG1000, Micro-batch, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.05 40.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.18 α = 90 b = 35.8 β = 107.02 c = 118.03 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2005-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1.0 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 15 96 0.08 0.08 7.7 3.3 37592 37592
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2 95.1 0.324 0.324 1.9 3.1 5405
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 15 37592 37592 1890 95.43 0.201 0.201 0.199 0.207 0.234 0.2412 RANDOM 15.876
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.53 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.348 r_dihedral_angle_4_deg 14.545 r_dihedral_angle_3_deg 12.419 r_dihedral_angle_1_deg 6.048 r_scangle_it 2.914 r_scbond_it 1.978 r_angle_refined_deg 1.221 r_mcangle_it 1.163 r_angle_other_deg 0.928 r_mcbond_it 0.799
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.348 r_dihedral_angle_4_deg 14.545 r_dihedral_angle_3_deg 12.419 r_dihedral_angle_1_deg 6.048 r_scangle_it 2.914 r_scbond_it 1.978 r_angle_refined_deg 1.221 r_mcangle_it 1.163 r_angle_other_deg 0.928 r_mcbond_it 0.799 r_symmetry_vdw_refined 0.223 r_nbd_refined 0.211 r_symmetry_vdw_other 0.196 r_nbd_other 0.181 r_symmetry_hbond_refined 0.178 r_nbtor_refined 0.165 r_mcbond_other 0.156 r_xyhbond_nbd_refined 0.148 r_chiral_restr 0.126 r_nbtor_other 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4265 Nucleic Acid Atoms Solvent Atoms 346 Heterogen Atoms 20
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection XDS data reduction CCP4 data scaling AMoRE phasing