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Native Toluene/o-xylene Monooxygenase Hydroxylase X-ray Crystal Structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1T0Q PDB entry 1T0Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 100 mM HEPES pH 7.5, 2.1-2.5 M ammonium sulfate, 2-4% PEG 400, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.14 60.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 182.555 α = 90 b = 182.555 β = 90 c = 68.111 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 101 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, double crystal monochromator, toroid focusing mirror 2006-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.979 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 90.4 0.087 55.8 99695 96823
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.92 78.9 0.43 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1T0Q 1.85 50 99695 96823 4813 90.4 0.199 0.199 0.197 0.23 0.2219 RANDOM 41.727
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.33 -1.66 -3.33 4.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.326 r_dihedral_angle_4_deg 19.527 r_dihedral_angle_3_deg 15.426 r_dihedral_angle_1_deg 6.658 r_scangle_it 4.247 r_scbond_it 2.759 r_mcangle_it 1.734 r_angle_refined_deg 1.689 r_mcbond_it 1.073 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.326 r_dihedral_angle_4_deg 19.527 r_dihedral_angle_3_deg 15.426 r_dihedral_angle_1_deg 6.658 r_scangle_it 4.247 r_scbond_it 2.759 r_mcangle_it 1.734 r_angle_refined_deg 1.689 r_mcbond_it 1.073 r_nbtor_refined 0.315 r_nbd_refined 0.216 r_symmetry_vdw_refined 0.186 r_chiral_restr 0.159 r_xyhbond_nbd_refined 0.149 r_metal_ion_refined 0.144 r_symmetry_hbond_refined 0.143 r_bond_refined_d 0.018 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7335 Nucleic Acid Atoms Solvent Atoms 365 Heterogen Atoms 21
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection HKL-2000 data reduction HKL-2000 data scaling EPMR phasing