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Crystal structure of a hypothetical protein from Archaeoglobus fulgidus binding riboflavin 5'-phosphate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 294 15% MPD, pH 7, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.81 56.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.042 α = 90 b = 103.182 β = 97.01 c = 103.842 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315 2006-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.97911 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 20 95.8 0.069 0.069 12.5 3.5 120468 115408 16.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.74 76.2 0.24 0.24 2.8 2.1 17476
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.65 20 114458 109616 5791 95.77 0.1702 0.16882 0.1703 0.19677 0.1973 RANDOM 18.568
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 0.14 -0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.074 r_dihedral_angle_4_deg 14.666 r_dihedral_angle_1_deg 12.1 r_dihedral_angle_3_deg 11.169 r_scangle_it 3.925 r_scbond_it 2.412 r_mcangle_it 1.315 r_angle_refined_deg 1.243 r_mcbond_it 0.898 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.074 r_dihedral_angle_4_deg 14.666 r_dihedral_angle_1_deg 12.1 r_dihedral_angle_3_deg 11.169 r_scangle_it 3.925 r_scbond_it 2.412 r_mcangle_it 1.315 r_angle_refined_deg 1.243 r_mcbond_it 0.898 r_nbtor_refined 0.306 r_nbd_refined 0.194 r_symmetry_hbond_refined 0.175 r_symmetry_vdw_refined 0.158 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6089 Nucleic Acid Atoms Solvent Atoms 819 Heterogen Atoms 110
Software Software Software Name Purpose REFMAC refinement CBASS data collection DENZO data reduction SCALEPACK data scaling SHELXD phasing