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Clostridium botulinum Neurotoxin Serotype A Light Chain Inhibited by L-arginine hydroxamate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 10-15% PEG 2000 MMe, 0.3M (NH4)2HPO4, 0.05M TRIS, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.35 47.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.238 α = 90 b = 67.928 β = 105.1 c = 98.305 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12B 1.1000 NSLS X12B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 95.3 0.143 8.4 3.3 35481 35481
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.49 71.4 0.577 2.1 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.41 50 35466 33688 1778 95.96 0.19464 0.19115 0.2014 0.26015 0.269 RANDOM 24.33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 -1.45 -0.06 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.977 r_dihedral_angle_3_deg 15.596 r_dihedral_angle_4_deg 14.34 r_dihedral_angle_1_deg 7.829 r_scangle_it 2.634 r_scbond_it 1.787 r_angle_refined_deg 1.599 r_mcangle_it 1.391 r_angle_other_deg 1.041 r_mcbond_it 0.862
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.977 r_dihedral_angle_3_deg 15.596 r_dihedral_angle_4_deg 14.34 r_dihedral_angle_1_deg 7.829 r_scangle_it 2.634 r_scbond_it 1.787 r_angle_refined_deg 1.599 r_mcangle_it 1.391 r_angle_other_deg 1.041 r_mcbond_it 0.862 r_symmetry_hbond_refined 0.504 r_symmetry_vdw_refined 0.345 r_symmetry_vdw_other 0.293 r_nbd_refined 0.201 r_nbd_other 0.187 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.161 r_mcbond_other 0.152 r_chiral_restr 0.093 r_nbtor_other 0.086 r_bond_refined_d 0.018 r_metal_ion_refined 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6426 Nucleic Acid Atoms Solvent Atoms 262 Heterogen Atoms 28
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction CBASS data collection