☰ Navigation Tabs
The structure of a putative ModE from Agrobacterium tumefaciens.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 0.2M LiSO4, 0.1M Bis-Tris ph 5.5, 25% PEG3350 , VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 44.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.719 α = 90 b = 79.536 β = 106.7 c = 43.994 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-11-02 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97945, 0.97929 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 39.77 93.96 0.093 12.3 3.1 10719 10719 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 39.77 10719 10719 534 93.96 0.17665 0.17374 0.23623 0.2523 RANDOM 43.975
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.23 1.9 -2.11 0.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.397 r_dihedral_angle_4_deg 18.392 r_dihedral_angle_3_deg 17.872 r_dihedral_angle_1_deg 6.031 r_scangle_it 4.469 r_scbond_it 3.118 r_mcbond_it 1.73 r_mcangle_it 1.677 r_angle_refined_deg 1.48 r_symmetry_hbond_refined 0.365
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.397 r_dihedral_angle_4_deg 18.392 r_dihedral_angle_3_deg 17.872 r_dihedral_angle_1_deg 6.031 r_scangle_it 4.469 r_scbond_it 3.118 r_mcbond_it 1.73 r_mcangle_it 1.677 r_angle_refined_deg 1.48 r_symmetry_hbond_refined 0.365 r_nbtor_refined 0.305 r_nbd_refined 0.21 r_symmetry_vdw_refined 0.179 r_xyhbond_nbd_refined 0.175 r_chiral_restr 0.107 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1746 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELX phasing MLPHARE phasing DM phasing RESOLVE phasing ARP/wARP model building O model building Coot model building