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Anabaena sensory rhodopsin transducer
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 293 100 mM sodium acetate, pH 4.6 and 7 to 11% (w/v) polyethylene glycol (PEG) 8000, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.22 44.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.274 α = 90 b = 57.274 β = 90 c = 39.788 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2003-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 98.5 0.031 15.9 4.5 11936
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 92 0.214 3.5 537
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 25.62 11921 567 100 0.203 0.202 0.2006 0.238 0.237 RANDOM 35.493
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.995 r_dihedral_angle_3_deg 15.773 r_dihedral_angle_4_deg 13.85 r_dihedral_angle_1_deg 6.571 r_scangle_it 5.272 r_scbond_it 3.091 r_mcangle_it 2.085 r_angle_refined_deg 1.731 r_mcbond_it 1.199 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.995 r_dihedral_angle_3_deg 15.773 r_dihedral_angle_4_deg 13.85 r_dihedral_angle_1_deg 6.571 r_scangle_it 5.272 r_scbond_it 3.091 r_mcangle_it 2.085 r_angle_refined_deg 1.731 r_mcbond_it 1.199 r_nbtor_refined 0.309 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.18 r_xyhbond_nbd_refined 0.177 r_symmetry_hbond_refined 0.129 r_chiral_restr 0.127 r_bond_refined_d 0.019 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 700 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction MLPHARE phasing