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Achiral, Cheap and Potent Inhibitors of Plasmepsins II
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 273 pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 3.75 67.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 161.099 α = 90 b = 161.099 β = 90 c = 73.932 γ = 120
Symmetry Space Group P 32 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2005-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 54.4 99.4 0.057 0.066 14.9 4.1 33401 33401 135650 135650 40
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.74 98.1 0.41 0.6 1.6 3.8 4774
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 54.4 31701 1695 99.34 0.21394 0.21128 0.211 0.26415 0.2176 RANDOM 67.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.27 -0.64 -1.27 1.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.538 r_dihedral_angle_4_deg 25.273 r_dihedral_angle_3_deg 18.21 r_dihedral_angle_1_deg 6.663 r_mcangle_it 2.714 r_scangle_it 1.99 r_mcbond_it 1.631 r_angle_refined_deg 1.501 r_scbond_it 1.413 r_nbtor_refined 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.538 r_dihedral_angle_4_deg 25.273 r_dihedral_angle_3_deg 18.21 r_dihedral_angle_1_deg 6.663 r_mcangle_it 2.714 r_scangle_it 1.99 r_mcbond_it 1.631 r_angle_refined_deg 1.501 r_scbond_it 1.413 r_nbtor_refined 0.32 r_symmetry_vdw_refined 0.223 r_nbd_refined 0.219 r_symmetry_hbond_refined 0.194 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.099 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5214 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement