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Crystal structure of immunoglobulin-like domains 1 and 2 of the receptor tyrosine kinase MuSK
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FHG PDB entry 1FHG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 8% PEG 4000, 0.2M Ammonium Sulfate, 0.1M Sodium Acetate pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.16 61.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.608 α = 90 b = 118.004 β = 90 c = 57.785 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.92014 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.205 50 98.7 0.06 15.9 3.6 27127
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.205 2.28 97.5 0.331 3.3 2620
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1FHG 2.205 30 26130 1309 95.12 0.218 0.216 0.216 0.258 RANDOM 31.626
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.74 -0.99 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.237 r_dihedral_angle_4_deg 15.392 r_dihedral_angle_3_deg 14.835 r_dihedral_angle_1_deg 6.8 r_scangle_it 2.896 r_scbond_it 1.734 r_angle_refined_deg 1.28 r_mcangle_it 1.233 r_mcbond_it 0.754 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.237 r_dihedral_angle_4_deg 15.392 r_dihedral_angle_3_deg 14.835 r_dihedral_angle_1_deg 6.8 r_scangle_it 2.896 r_scbond_it 1.734 r_angle_refined_deg 1.28 r_mcangle_it 1.233 r_mcbond_it 0.754 r_nbtor_refined 0.298 r_nbd_refined 0.192 r_symmetry_vdw_refined 0.177 r_symmetry_hbond_refined 0.159 r_xyhbond_nbd_refined 0.134 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2830 Nucleic Acid Atoms Solvent Atoms 175 Heterogen Atoms 15
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing