☰ Navigation Tabs
Structure of the cooperative Excisionase (Xis)-DNA complex reveals a micronucleoprotein filament
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 298 30% PEG 4000, 0.2M Ammonium Acetate 0.1M Sodium Citrate, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.27 57.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.655 α = 90 b = 111.655 β = 90 c = 76.268 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2005-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.0 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 93.25 100 0.079 24.4 6.9 16295 16295 68.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 100 0.451 5.13 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.601 55.81 16295 16295 863 99.92 0.20105 0.19876 0.1996 0.24577 0.2427 RANDOM 43.651
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 -0.17 -0.34 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.226 r_dihedral_angle_4_deg 21.558 r_dihedral_angle_3_deg 19.501 r_dihedral_angle_1_deg 7.928 r_scangle_it 3.913 r_scbond_it 2.799 r_mcbond_it 1.955 r_mcangle_it 1.788 r_mcbond_other 0.751 r_angle_other_deg 0.703
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.226 r_dihedral_angle_4_deg 21.558 r_dihedral_angle_3_deg 19.501 r_dihedral_angle_1_deg 7.928 r_scangle_it 3.913 r_scbond_it 2.799 r_mcbond_it 1.955 r_mcangle_it 1.788 r_mcbond_other 0.751 r_angle_other_deg 0.703 r_angle_refined_deg 0.653 r_nbd_other 0.254 r_symmetry_vdw_other 0.242 r_nbtor_refined 0.223 r_symmetry_vdw_refined 0.207 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.173 r_symmetry_hbond_refined 0.173 r_nbtor_other 0.082 r_chiral_restr 0.07 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1394 Nucleic Acid Atoms 1385 Solvent Atoms 39 Heterogen Atoms
Software Software Software Name Purpose BOS data collection SHELX model building REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELX phasing