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The Coiled-coil Domain (residues 1-93) Structure of the Sin Nombre Virus Nucleocapsid Protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IC6 2IC6, chain A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.15 M potassium bromide, 0.1 M Tris-HCl, 34% PEG mono-methyl ether (PEG MME) 200, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.12 42.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.774 α = 90 b = 42.647 β = 121.11 c = 57.996 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Bent conical Si-mirror (Rh coating) 2006-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.9002 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 98.8 0.039 0.039 32.7 4 12283 12165 2 2 36.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 99 0.248 0.248 7.5 3.8 1194
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2IC6, chain A 2 30 12263 12141 1235 98.8 0.257 0.257 0.247 0.2462 0.328 0.3329 RANDOM 43.356
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.24 -0.84 0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.107 r_dihedral_angle_3_deg 20.337 r_dihedral_angle_4_deg 18.99 r_dihedral_angle_1_deg 6.702 r_scangle_it 5.839 r_scbond_it 3.983 r_angle_refined_deg 2.444 r_mcangle_it 2.357 r_mcbond_it 1.554 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.107 r_dihedral_angle_3_deg 20.337 r_dihedral_angle_4_deg 18.99 r_dihedral_angle_1_deg 6.702 r_scangle_it 5.839 r_scbond_it 3.983 r_angle_refined_deg 2.444 r_mcangle_it 2.357 r_mcbond_it 1.554 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.309 r_nbd_refined 0.282 r_xyhbond_nbd_refined 0.264 r_symmetry_vdw_refined 0.256 r_chiral_restr 0.182 r_bond_refined_d 0.029 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1134 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction