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Crystal structure of Probable transcriptional regulatory protein RHA5900
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 298 0.2M MgCl, 0.1M Tris pH8.5, 26%PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.24 45.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.588 α = 90 b = 118.778 β = 90 c = 97.173 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-02-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97935 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 97 0.06 44.76 7.2 65534 63568 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 94 0.536 2.42 5.6 6060
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 50 60340 60340 3200 96.99 0.1698 0.1698 0.16811 0.20077 0.2253 RANDOM 21.038
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 0.16 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.14 r_dihedral_angle_4_deg 17.304 r_dihedral_angle_3_deg 13.031 r_sphericity_free 5.685 r_dihedral_angle_1_deg 4.696 r_scangle_it 3.593 r_sphericity_bonded 2.785 r_scbond_it 2.611 r_mcangle_it 1.808 r_rigid_bond_restr 1.484
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.14 r_dihedral_angle_4_deg 17.304 r_dihedral_angle_3_deg 13.031 r_sphericity_free 5.685 r_dihedral_angle_1_deg 4.696 r_scangle_it 3.593 r_sphericity_bonded 2.785 r_scbond_it 2.611 r_mcangle_it 1.808 r_rigid_bond_restr 1.484 r_angle_refined_deg 1.332 r_mcbond_it 1.24 r_nbtor_refined 0.312 r_nbd_refined 0.216 r_symmetry_hbond_refined 0.196 r_symmetry_vdw_refined 0.188 r_xyhbond_nbd_refined 0.184 r_chiral_restr 0.091 r_metal_ion_refined 0.062 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2975 Nucleic Acid Atoms Solvent Atoms 485 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing