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Crystal structure of a Conserved Protein of Unknown Function SP1372 from Streptococcus pneumoniae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 60% Tacsimate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.6 52.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.808 α = 90 b = 86.715 β = 90 c = 93.881 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2005-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97980 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 33.63 99.49 0.082 20.2 20205 20102 2 40.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.462 99.48 0.366 3 4.8 1480
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 33.63 20102 20102 1088 99.49 0.23188 0.23188 0.22872 0.2343 0.28902 0.295 RANDOM 40.591
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.97 2.83 -0.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.622 r_dihedral_angle_4_deg 24.326 r_dihedral_angle_3_deg 19.616 r_dihedral_angle_1_deg 5.935 r_scangle_it 3.212 r_scbond_it 2.2 r_angle_refined_deg 1.646 r_mcangle_it 1.36 r_mcbond_it 1.183 r_angle_other_deg 1.027
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.622 r_dihedral_angle_4_deg 24.326 r_dihedral_angle_3_deg 19.616 r_dihedral_angle_1_deg 5.935 r_scangle_it 3.212 r_scbond_it 2.2 r_angle_refined_deg 1.646 r_mcangle_it 1.36 r_mcbond_it 1.183 r_angle_other_deg 1.027 r_symmetry_vdw_refined 0.363 r_symmetry_vdw_other 0.303 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.202 r_mcbond_other 0.188 r_nbtor_refined 0.184 r_nbd_other 0.181 r_nbtor_other 0.095 r_chiral_restr 0.086 r_symmetry_hbond_refined 0.065 r_bond_refined_d 0.019 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3438 Nucleic Acid Atoms Solvent Atoms 105 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building