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Crystal structure of SCO3833, a member of the TetR transcriptional regulator family from Streptomyces coelicolor A3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 293 Crystallized from mother liquor containing 0.1 M Tris-HCl pH=8.5 and 7%(w/v) PEG 8000, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.39 48.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.308 α = 90 b = 61.308 β = 90 c = 113.865 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 CCD SBC-3 MIRRORS 2006-06-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97940 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 53.07 99.8 0.062 9.2 10.9 30460 30460 32.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.693 100 0.388 3.7 11.1 2212
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.65 53.07 28923 28923 1537 99.8 0.17042 0.17042 0.1685 0.1822 0.2082 0.2225 RANDOM 23.489
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 0.12 0.25 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.66 r_dihedral_angle_4_deg 18.411 r_dihedral_angle_3_deg 13.08 r_dihedral_angle_1_deg 5.067 r_scangle_it 4.189 r_scbond_it 2.921 r_angle_refined_deg 1.654 r_mcangle_it 1.639 r_mcbond_it 1.223 r_angle_other_deg 0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.66 r_dihedral_angle_4_deg 18.411 r_dihedral_angle_3_deg 13.08 r_dihedral_angle_1_deg 5.067 r_scangle_it 4.189 r_scbond_it 2.921 r_angle_refined_deg 1.654 r_mcangle_it 1.639 r_mcbond_it 1.223 r_angle_other_deg 0.92 r_mcbond_other 0.346 r_symmetry_vdw_other 0.28 r_nbd_refined 0.225 r_symmetry_hbond_refined 0.205 r_nbd_other 0.2 r_xyhbond_nbd_refined 0.199 r_nbtor_refined 0.185 r_symmetry_vdw_refined 0.177 r_chiral_restr 0.104 r_nbtor_other 0.083 r_bond_refined_d 0.02 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1559 Nucleic Acid Atoms Solvent Atoms 286 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing ARP/wARP model building RESOLVE phasing CCP4 phasing O model building Coot model building