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Crystal structure of a protein with FMN-binding split barrel fold (NP_828636.1) from Streptomyces avermitilis at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 5.6 277 20.0% iso-Propanol, 20.0% PEG-4000, 0.1M Citrate pH 5.6, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.35 47.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.89 α = 90 b = 87.89 β = 90 c = 151.58 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2006-06-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162,0.97936,0.97920 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 34.001 100 0.077 14.9 14 24072 31.69
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 100 0.688 12.3 1672
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 34.001 24057 1196 99.87 0.18 0.18 0.178 0.1871 0.23 0.2372 RANDOM 32.924
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 0.26 0.51 -0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.587 r_dihedral_angle_4_deg 17.765 r_dihedral_angle_3_deg 13.724 r_dihedral_angle_1_deg 6.928 r_scangle_it 6.764 r_scbond_it 5.075 r_mcangle_it 3.19 r_mcbond_it 2.204 r_angle_refined_deg 1.636 r_angle_other_deg 0.891
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.587 r_dihedral_angle_4_deg 17.765 r_dihedral_angle_3_deg 13.724 r_dihedral_angle_1_deg 6.928 r_scangle_it 6.764 r_scbond_it 5.075 r_mcangle_it 3.19 r_mcbond_it 2.204 r_angle_refined_deg 1.636 r_angle_other_deg 0.891 r_mcbond_other 0.79 r_symmetry_vdw_other 0.32 r_symmetry_vdw_refined 0.224 r_nbd_refined 0.213 r_nbd_other 0.2 r_symmetry_hbond_refined 0.194 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.092 r_nbtor_other 0.086 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2302 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 16
Software Software Software Name Purpose MolProbity model building SOLVE phasing REFMAC refinement SCALEPACK data scaling PDB_EXTRACT data extraction DENZO data reduction