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Crystal structure of putative tail lysozyme (NP_952040.1) from GEOBACTER SULFURREDUCENS at 1.44 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP, NANODROP 7.1 277 0.2M LiNO3, 20.0% PEG 3350, pH 7.1, VAPOR DIFFUSION,SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.97 37.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.27 α = 90 b = 43.332 β = 90 c = 64.636 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2006-08-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.94926,0.97925,0.97939 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.44 43.315 90.4 0.049 13.38 3.92 19105 23.067
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.44 1.49 48.9 0.439 1.8 1.92 982
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.44 43.315 19064 978 90.95 0.169 0.168 0.1762 0.203 0.2093 RANDOM 17.112
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.52 -0.8 -0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.218 r_dihedral_angle_4_deg 15.474 r_dihedral_angle_3_deg 11.943 r_scangle_it 5.613 r_dihedral_angle_1_deg 5.578 r_scbond_it 4.144 r_mcangle_it 2.82 r_mcbond_it 2.246 r_angle_refined_deg 1.544 r_angle_other_deg 0.956
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.218 r_dihedral_angle_4_deg 15.474 r_dihedral_angle_3_deg 11.943 r_scangle_it 5.613 r_dihedral_angle_1_deg 5.578 r_scbond_it 4.144 r_mcangle_it 2.82 r_mcbond_it 2.246 r_angle_refined_deg 1.544 r_angle_other_deg 0.956 r_mcbond_other 0.439 r_symmetry_vdw_other 0.323 r_nbd_other 0.207 r_nbd_refined 0.202 r_nbtor_refined 0.177 r_symmetry_hbond_refined 0.172 r_xyhbond_nbd_refined 0.144 r_symmetry_vdw_refined 0.124 r_chiral_restr 0.088 r_nbtor_other 0.086 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 870 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 8
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing SOLVE phasing